PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000145.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 189aa    MW: 20182.8 Da    PI: 6.9417
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000145.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-052547123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C++ F++k  L  H++ H
  Itr_sc000145.1_g00006.1 25 FSCKYCDRKFNSKRALGGHQNAH 47
                             89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-62552No hitNo description
PROSITE profilePS5015711.7182552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MATAGGQSRE EDRAAVAEAA AVVEFSCKYC DRKFNSKRAL GGHQNAHRRE RDMDGTAKRS  60
RRGTFMDYYP FSPPFAGLPP LLAGAGAGAG AASMPPYFLP GHPIPLPEIP ARPPVYAYPF  120
PPAVPVENYL PHAQVFPPAM TIPGGNTFPV GSVPANSAVT PMLGGSIANN SNPWNTPDMI  180
EDGDQNYWI
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13342714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-10zinc finger protein 4